I can live with the reversal bug in the throttle and rudder because quite honestly, for my style of flying I can live with it. I've never fussed about that kind of precision.
At least for the throttle and the R1 and R2 - wheels in IL-2 Sturmovik (not in CloD!) you could use YaDeLi to lessen the effect (it does not work so well for rudder and trims)