Well I followed your instructions with a clean install and any type of saving crashes my game. I've attached a compressed F5 use logfile. Here are the last 2 lines:
[ScriptSystem] error: stack overflow
[ScriptSystem] error: unable to recover; exiting
There was one difference with the new dll files, I am able to start the game after a crash. When I restarted, it defaulted to your profile instead of the one I created for testing. There was a quicksave when I siwtched back to my new profile but it does not load stating that it is corrupt.
One thing I noted was my ships cargo was full with I assume was 20 of each ship, gun. ect. I assume you had that coded in for testing but for a new player trying the mod that;s a weee bit overpowered.