you must not know programing, i think. There are files like shipdescription.xml, where you can define, which modules will be set for every ship. You can check script for generating flights - create_flight.script, there are set roles too. It is possible, that pilots with other roles than attack and defend temporarily not uses rockets, if their role not allow it.
At least i can see it in SW1, in mod Expansion for CW can be difference. If some script is deciding, which modul will be set into fighter in dependency on difficulty and stage of progress, there must by find and checked such one. But this is just my rough estimation, i do not play nor mod Expansion, nor SW-CivilWar.
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