Before I read your post I hadn't given it much thought to what path I chose. But now I realize that I'm playing NESF for what its worth. That is, if it suits me and I feel they are not taking advantage of their size I play along.
The first encounter with the MSF I had in this game (note: I haven't played any other Star wolves except this third one) I found them arrogant and way too much military-chain-of-command'ish. Not my style - I wanna be the lone ranger as much as possible
Btw. almost got my butt kicked by those berserkers.
The only concern is that Hacker dude that helped me get away from that MSF biatch, will I see him again or do I need to help MSF to get him back?